STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108903047SAP domain-containing protein. (1324 aa)    
Predicted Functional Partners:
ENSLCAP00010035849
Uncharacterized protein.
   
 0.939
Rnps1
RNA binding protein S1, serine-rich domain.
   
 0.939
LOC108887611
Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins.
   
 0.924
SAP18
Histone deacetylase complex subunit SAP18.
   
 0.924
pnn
Uncharacterized protein.
   
 0.921
eif4a3
Uncharacterized protein; Belongs to the DEAD box helicase family.
    
 0.886
pabpn1
RRM domain-containing protein.
   
 0.835
PABPN1L
RRM domain-containing protein.
   
 0.835
alyref
RRM domain-containing protein.
   
 0.785
LOC108878925
Uncharacterized protein.
    
 0.785
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.