STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108884283RRM domain-containing protein. (315 aa)    
Predicted Functional Partners:
hnrnpk
Uncharacterized protein.
   
 0.977
Rbmx
RNA binding motif protein X-linked.
   
 0.963
HNRNPA3
Uncharacterized protein.
   
 0.955
LOC108876473
Uncharacterized protein.
   
 0.955
LOC108877814
Uncharacterized protein.
   
0.939
ENSLCAP00010011019
Interleukin enhancer binding factor 2.
   
 
 0.838
LOC108889351
RRM domain-containing protein.
   
 0.813
SRSF3
RRM domain-containing protein.
   
 0.813
LOC108881323
Uncharacterized protein.
   
 0.807
eif4a3
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.799
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.