STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLCAP00010001220Short chain dehydrogenase/reductase family 39U, member 1. (342 aa)    
Predicted Functional Partners:
ncln
Peptidase_M28 domain-containing protein.
      
 0.603
Stxbp6
Syntaxin binding protein 6 (amisyn).
      
 0.526
fech
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
  
  
 0.524
hsdl2
SCP2 domain-containing protein.
  
  
 0.485
tpp2
Uncharacterized protein.
      
 0.477
ENSLCAP00010015275
Nicalin; May antagonize Nodal signaling and subsequent organization of axial structures during mesodermal patterning.
      
 0.457
isoc2
Isochorismatase domain-containing protein.
   
  
 0.442
aagab
Uncharacterized protein.
      
 0.431
acp1
LMWPc domain-containing protein.
   
    0.424
ENSLCAP00010019225
Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.
      
 0.410
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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