STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108884612Uncharacterized protein. (1257 aa)    
Predicted Functional Partners:
ENSLCAP00010005063
Leucine-rich repeats and guanylate kinase domain containing.
   
 
 0.584
exoc4
Sec8_exocyst domain-containing protein.
    
 0.525
rab25
Uncharacterized protein.
   
 0.464
LOC108899426
Uncharacterized protein.
   
 0.464
Rab11a
RAB11a, member RAS oncogene family.
   
 0.464
LOC108879053
Uncharacterized protein.
   
 0.464
ENSLCAP00010020397
RAB25, member RAS oncogene family a.
   
 0.464
LOC108879054
Uncharacterized protein.
   
 0.464
LOC108875180
Uncharacterized protein.
   
 0.464
ENSLCAP00010028956
Uncharacterized protein.
   
 0.464
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.