STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLCAP00010002035Testis associated actin remodelling kinase 2. (674 aa)    
Predicted Functional Partners:
parvb
Uncharacterized protein.
     
 0.604
LOC108902323
Uncharacterized protein.
     
 0.604
Mib2
Mindbomb E3 ubiquitin protein ligase 2.
   
 0.549
spry4
Uncharacterized protein.
    
 0.493
ENSLCAP00010038150
Intersectin 2a.
   
 0.467
ENSLCAP00010057040
Intersectin 2b.
   
 0.467
ENSLCAP00010032062
Uncharacterized protein.
   
 0.457
traf7
Uncharacterized protein.
   
 0.451
Ripk4
Receptor-interacting serine-threonine kinase 4.
    
0.424
ENSLCAP00010038334
Cyclin G associated kinase.
    
0.420
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.