N4bp2 protein (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

N4bp2

NEDD4 binding protein 2. (1523 aa)

Predicted Functional Partners:

ndufb7

0.793

ndufa6

0.614

Ndufs2

0.612

ndufa5

0.610

ndufs6

0.609

ndufs3

0.603

gsto1

0.599

ndufa12

0.594

ndufa8

0.584

ND1

0.579

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N4bp2	ND1	ENSLCAP00010002904	ENSLCAP00010006471	NEDD4 binding protein 2.	Uncharacterized protein.	0.579
N4bp2	Ndufs2	ENSLCAP00010002904	ENSLCAP00010020969	NEDD4 binding protein 2.	NADH:ubiquinone oxidoreductase core subunit S2; Belongs to the complex I 49 kDa subunit family.	0.612
N4bp2	gsto1	ENSLCAP00010002904	ENSLCAP00010015091	NEDD4 binding protein 2.	Uncharacterized protein.	0.599
N4bp2	ndufa12	ENSLCAP00010002904	ENSLCAP00010057610	NEDD4 binding protein 2.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.594
N4bp2	ndufa5	ENSLCAP00010002904	ENSLCAP00010042248	NEDD4 binding protein 2.	Uncharacterized protein.	0.610
N4bp2	ndufa6	ENSLCAP00010002904	ENSLCAP00010026469	NEDD4 binding protein 2.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.614
N4bp2	ndufa8	ENSLCAP00010002904	ENSLCAP00010006761	NEDD4 binding protein 2.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.584
N4bp2	ndufb7	ENSLCAP00010002904	ENSLCAP00010024860	NEDD4 binding protein 2.	Uncharacterized protein.	0.793
N4bp2	ndufs3	ENSLCAP00010002904	ENSLCAP00010003832	NEDD4 binding protein 2.	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	0.603
N4bp2	ndufs6	ENSLCAP00010002904	ENSLCAP00010050850	NEDD4 binding protein 2.	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.609
ND1	N4bp2	ENSLCAP00010006471	ENSLCAP00010002904	Uncharacterized protein.	NEDD4 binding protein 2.	0.579
ND1	Ndufs2	ENSLCAP00010006471	ENSLCAP00010020969	Uncharacterized protein.	NADH:ubiquinone oxidoreductase core subunit S2; Belongs to the complex I 49 kDa subunit family.	0.999
ND1	gsto1	ENSLCAP00010006471	ENSLCAP00010015091	Uncharacterized protein.	Uncharacterized protein.	0.794
ND1	ndufa12	ENSLCAP00010006471	ENSLCAP00010057610	Uncharacterized protein.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.996
ND1	ndufa5	ENSLCAP00010006471	ENSLCAP00010042248	Uncharacterized protein.	Uncharacterized protein.	0.996
ND1	ndufa6	ENSLCAP00010006471	ENSLCAP00010026469	Uncharacterized protein.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.995
ND1	ndufa8	ENSLCAP00010006471	ENSLCAP00010006761	Uncharacterized protein.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.996
ND1	ndufb7	ENSLCAP00010006471	ENSLCAP00010024860	Uncharacterized protein.	Uncharacterized protein.	0.995
ND1	ndufs3	ENSLCAP00010006471	ENSLCAP00010003832	Uncharacterized protein.	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	0.999
ND1	ndufs6	ENSLCAP00010006471	ENSLCAP00010050850	Uncharacterized protein.	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.996