STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLCAP00010003567Uncharacterized protein. (228 aa)    
Predicted Functional Partners:
ENSLCAP00010033948
Apoptotic protease-activating factor 1; Oligomeric Apaf-1 mediates the cytochrome c-dependent autocatalytic activation of pro-caspase-9 (Apaf-3), leading to the activation of caspase-3 and apoptosis. This activation requires ATP.
    
 0.698
ENSLCAP00010019756
Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.
    
 0.591
ENSLCAP00010055093
Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.
    
 0.591
Mib2
Mindbomb E3 ubiquitin protein ligase 2.
    
  0.477
Ripk4
Receptor-interacting serine-threonine kinase 4.
    
 0.464
cenpn
Uncharacterized protein.
   
 0.448
cenpm
Uncharacterized protein.
   
 0.434
Cenpq
Uncharacterized protein.
   
 0.427
cenpk
Uncharacterized protein.
   
 0.400
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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