STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLCAP00010006481Stabilin 2. (1867 aa)    
Predicted Functional Partners:
ENSLCAP00010013697
Secreted protein, acidic, cysteine-rich (osteonectin).
     
 0.762
ENSLCAP00010004411
SPARC-like 1.
     
 0.696
LOC108875252
Link domain-containing protein.
     
 0.652
Apob
Apolipoprotein Ba.
   
 
 0.616
ENSLCAP00010045839
Vitellogenin domain-containing protein.
   
 
 0.616
ENSLCAP00010045879
Apolipoprotein Bb, tandem duplicate 2.
   
 
 0.616
skap1
Uncharacterized protein.
      
 0.592
tsnare1
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
      
 0.587
FIG4
FIG4 phosphoinositide 5-phosphatase.
      
 0.583
reep3
Receptor expression-enhancing protein.
      
 0.574
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.