LOC108886205 protein (Lates calcarifer) - STRING interaction network

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Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

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protein homology

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Score

LOC108886205

Uncharacterized protein. (381 aa)

Predicted Functional Partners:

gtpbp3

0.930

ENSLCAP00010000533

0.811

ENSLCAP00010011962

0.811

ergic3

0.811

ENSLCAP00010014829

0.778

derl2

0.778

sel1l

0.775

ENSLCAP00010028935

0.771

Trmu

0.741

yars1

0.573

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010000533	LOC108886205	ENSLCAP00010000533	ENSLCAP00010006602	ERGIC and golgi 3.	Uncharacterized protein.	0.811
ENSLCAP00010000533	Trmu	ENSLCAP00010000533	ENSLCAP00010032237	ERGIC and golgi 3.	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.	0.741
ENSLCAP00010000533	gtpbp3	ENSLCAP00010000533	ENSLCAP00010015112	ERGIC and golgi 3.	TrmE-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.930
ENSLCAP00010000533	yars1	ENSLCAP00010000533	ENSLCAP00010053317	ERGIC and golgi 3.	Tyrosine--tRNA ligase.	0.573
ENSLCAP00010011962	LOC108886205	ENSLCAP00010011962	ENSLCAP00010006602	ERGIC_N domain-containing protein.	Uncharacterized protein.	0.811
ENSLCAP00010011962	Trmu	ENSLCAP00010011962	ENSLCAP00010032237	ERGIC_N domain-containing protein.	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.	0.741
ENSLCAP00010011962	gtpbp3	ENSLCAP00010011962	ENSLCAP00010015112	ERGIC_N domain-containing protein.	TrmE-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.930
ENSLCAP00010011962	yars1	ENSLCAP00010011962	ENSLCAP00010053317	ERGIC_N domain-containing protein.	Tyrosine--tRNA ligase.	0.573
ENSLCAP00010014829	ENSLCAP00010028935	ENSLCAP00010014829	ENSLCAP00010028935	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Si:dkey-24p1.6.	0.939
ENSLCAP00010014829	LOC108886205	ENSLCAP00010014829	ENSLCAP00010006602	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Uncharacterized protein.	0.778
ENSLCAP00010014829	derl2	ENSLCAP00010014829	ENSLCAP00010028688	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.901
ENSLCAP00010014829	sel1l	ENSLCAP00010014829	ENSLCAP00010041700	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Fibronectin type-II domain-containing protein.	0.963
ENSLCAP00010028935	ENSLCAP00010014829	ENSLCAP00010028935	ENSLCAP00010014829	Si:dkey-24p1.6.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.939
ENSLCAP00010028935	LOC108886205	ENSLCAP00010028935	ENSLCAP00010006602	Si:dkey-24p1.6.	Uncharacterized protein.	0.771
ENSLCAP00010028935	derl2	ENSLCAP00010028935	ENSLCAP00010028688	Si:dkey-24p1.6.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.939
LOC108886205	ENSLCAP00010000533	ENSLCAP00010006602	ENSLCAP00010000533	Uncharacterized protein.	ERGIC and golgi 3.	0.811
LOC108886205	ENSLCAP00010011962	ENSLCAP00010006602	ENSLCAP00010011962	Uncharacterized protein.	ERGIC_N domain-containing protein.	0.811
LOC108886205	ENSLCAP00010014829	ENSLCAP00010006602	ENSLCAP00010014829	Uncharacterized protein.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.778
LOC108886205	ENSLCAP00010028935	ENSLCAP00010006602	ENSLCAP00010028935	Uncharacterized protein.	Si:dkey-24p1.6.	0.771
LOC108886205	Trmu	ENSLCAP00010006602	ENSLCAP00010032237	Uncharacterized protein.	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.	0.741