STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WDFY4WDFY family member 4. (2449 aa)    
Predicted Functional Partners:
LOC108891182
Autophagy protein 5; Involved in autophagic vesicle formation.
    
 
 0.692
ENSLCAP00010025602
Autophagy protein 5; Involved in autophagic vesicle formation.
    
 
 0.692
ap1s3
Uncharacterized protein.
   
  
 0.680
wdfy2
Uncharacterized protein.
   
  
 0.680
rack1
WD_REPEATS_REGION domain-containing protein.
    
0.674
ENSLCAP00010006385
Beclin 1, autophagy related.
    
 
 0.668
vta1
Uncharacterized protein.
    
 
 0.657
smpd2
Endo/exonuclease/phosphatase domain-containing protein.
     
 0.635
rccd1
Uncharacterized protein.
   
 
 0.633
tmem208
Uncharacterized protein.
      
 0.624
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.