STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108882629Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (615 aa)    
Predicted Functional Partners:
syk
Tyrosine-protein kinase.
   
0.955
LOC108879242
Tyrosine-protein kinase.
   
 0.954
ENSLCAP00010038047
Tyrosine-protein kinase.
   
 0.954
grb2
Uncharacterized protein.
   
0.945
Ptpn11
Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.
  
  
 
0.901
LOC108873688
PH domain-containing protein.
    
 0.877
gab1
PH domain-containing protein.
    
 0.877
Sos1
Son of sevenless homolog 1 (Drosophila).
    
 0.804
Sos2
Son of sevenless homolog 2 (Drosophila).
    
 0.804
gab2
PH domain-containing protein.
    
 0.786
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.