STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLCAP00010009058Uncharacterized protein. (200 aa)    
Predicted Functional Partners:
Stk11
Serine/threonine kinase 11; Belongs to the protein kinase superfamily.
   
 0.948
Acacb
Acetyl-CoA carboxylase beta.
   
 0.908
Ephx2
Epoxide hydrolase 2, cytoplasmic.
  
 
 0.819
LOC108879280
Protein kinase domain-containing protein.
   
 0.794
LOC108880315
AMPKBI domain-containing protein.
   
 0.792
PRKAB2
AMPKBI domain-containing protein.
   
 0.792
LOC108878615
AMPKBI domain-containing protein.
   
 0.792
gmps
Uncharacterized protein.
  
 0.778
gart
Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.
  
  
 0.774
atic
MGS domain-containing protein.
  
 
 0.755
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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