ENSLCAP00010009477 protein (Lates calcarifer)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSLCAP00010009477

Uncharacterized protein. (339 aa)

Predicted Functional Partners:

ENSLCAP00010016623

0.433

slc31a2

0.426

LOC108878967

0.407

acp1

0.403

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010009477	ENSLCAP00010016623	ENSLCAP00010009477	ENSLCAP00010016623	Uncharacterized protein.	TNFAIP3 interacting protein 1.	0.433
ENSLCAP00010009477	LOC108878967	ENSLCAP00010009477	ENSLCAP00010054636	Uncharacterized protein.	Uncharacterized protein.	0.407
ENSLCAP00010009477	acp1	ENSLCAP00010009477	ENSLCAP00010022207	Uncharacterized protein.	LMWPc domain-containing protein.	0.403
ENSLCAP00010009477	slc31a2	ENSLCAP00010009477	ENSLCAP00010049157	Uncharacterized protein.	Uncharacterized protein.	0.426
ENSLCAP00010016623	ENSLCAP00010009477	ENSLCAP00010016623	ENSLCAP00010009477	TNFAIP3 interacting protein 1.	Uncharacterized protein.	0.433
LOC108878967	ENSLCAP00010009477	ENSLCAP00010054636	ENSLCAP00010009477	Uncharacterized protein.	Uncharacterized protein.	0.407
acp1	ENSLCAP00010009477	ENSLCAP00010022207	ENSLCAP00010009477	LMWPc domain-containing protein.	Uncharacterized protein.	0.403
slc31a2	ENSLCAP00010009477	ENSLCAP00010049157	ENSLCAP00010009477	Uncharacterized protein.	Uncharacterized protein.	0.426