STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108875630LID domain-containing protein. (414 aa)    
Predicted Functional Partners:
lmo2
Uncharacterized protein.
    
 0.925
ENSLCAP00010031917
T-cell acute lymphocytic leukemia 1.
    
 0.919
lmo3
Uncharacterized protein.
    
 0.841
LOC108888827
Uncharacterized protein.
    
 0.841
cunh1orf53
Uncharacterized protein.
    
 0.703
ENSLCAP00010043804
Uncharacterized protein.
    
 0.703
lhx2
Uncharacterized protein.
    
 0.703
ENSLCAP00010009693
ISL LIM homeobox 2a.
    
 0.684
isl1
Uncharacterized protein.
    
 0.684
ISL2
ISL LIM homeobox 2b.
    
 0.684
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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