STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL22A1Collagen type XXII alpha 1 chain. (1149 aa)    
Predicted Functional Partners:
ENSLCAP00010032062
Uncharacterized protein.
   
 0.821
ENSLCAP00010057237
WD repeat domain 90.
   
 0.811
mysm1
Uncharacterized protein.
    
 0.729
ENSLCAP00010001080
TROVE domain-containing protein.
    
 0.686
Ripk4
Receptor-interacting serine-threonine kinase 4.
   
 0.680
LOC108901215
Death domain-containing protein.
   
  0.660
ENSLCAP00010030143
P53-induced death domain protein 1.
   
  0.660
rps27a
Ubiquitin-like domain-containing protein.
    
 0.659
ENSLCAP00010011538
Translocase of outer mitochondrial membrane 20.
    
 0.642
ENSLCAP00010059212
AT rich interactive domain 4A (RBP1-like).
    
 0.642
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.