STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ca6Alpha-carbonic anhydrase domain-containing protein; Belongs to the alpha-carbonic anhydrase family. (539 aa)    
Predicted Functional Partners:
rpf2
Brix domain-containing protein.
   
 
 0.627
Cunh6orf58
Liver-enriched gene 1, tandem duplicate 2.
   
  
 0.587
rrs1
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.
   
 
 0.533
grwd1
WD_REPEATS_REGION domain-containing protein.
   
  
 0.524
rpl11
Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.
    
 
 0.471
ENSLCAP00010005814
Uncharacterized protein; Belongs to the semaphorin family.
      
 0.461
ENSLCAP00010028429
Uncharacterized protein; Belongs to the semaphorin family.
      
 0.461
Nle1
Notchless homolog 1 (Drosophila).
   
  
 0.460
Gtpbp4
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
  
 0.449
ENSLCAP00010047246
WD repeat domain 43.
   
    0.444
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.