STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ankrd34cANK_REP_REGION domain-containing protein. (529 aa)    
Predicted Functional Partners:
Fam151b
Family with sequence similarity 151, member B.
      
 0.523
ift81
IFT81_CH domain-containing protein.
    
 0.472
ift22
Uncharacterized protein.
    
 0.443
ENSLCAP00010026700
Intraflagellar transport 88 homolog.
   
 0.437
ift52
ABC_transp_aux domain-containing protein.
    
 0.431
Ubxn7
UBX domain protein 7.
    
 0.421
SYNGR3
Synaptogyrin 3a.
   
  
 0.416
ENSLCAP00010031025
Fleer.
    
 0.413
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.