STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubxn11Uncharacterized protein. (494 aa)    
Predicted Functional Partners:
Ubxn7
UBX domain protein 7.
    
 
 0.971
plaa
Uncharacterized protein.
    
 
 0.871
yod1
Uncharacterized protein.
   
 
 0.860
ENSLCAP00010052448
UBX domain protein 10.
    
 
 0.816
spata5l1
Uncharacterized protein.
   
 0.807
SPATA5
Uncharacterized protein.
   
 0.807
LOC108885429
Uncharacterized protein; Belongs to the AAA ATPase family.
   
 0.807
vcp
Uncharacterized protein.
   
 0.807
ufd1
Uncharacterized protein.
   
 
 0.759
LOC108880289
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
   
 0.694
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.