STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ankrd29ANK_REP_REGION domain-containing protein. (298 aa)    
Predicted Functional Partners:
Tmem241
Transmembrane protein 241.
    
 
 0.605
Npc1
Niemann-Pick disease, type C1.
 
  
 
 0.556
spsb3
Uncharacterized protein.
     
 0.535
LOC108886801
Uncharacterized protein.
     
 0.533
Cdkn2c
ANK_REP_REGION domain-containing protein.
  
 
   0.520
ankrd10
ANK_REP_REGION domain-containing protein.
  
   
 0.514
PPP6C
Serine/threonine-protein phosphatase.
    
 0.503
PPP6C-2
Serine/threonine-protein phosphatase.
    
 0.503
LOC108895835
ANK_REP_REGION domain-containing protein.
  
  
  0.498
Cdh22
Cadherin 22; Cadherins are calcium-dependent cell adhesion proteins.
    
 0.484
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.