STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rab2aUncharacterized protein. (212 aa)    
Predicted Functional Partners:
ENSLCAP00010021899
Basic leucine zipper nuclear factor 1.
    
 0.885
ENSLCAP00010038150
Intersectin 2a.
    
 0.827
ENSLCAP00010057040
Intersectin 2b.
    
 0.827
rabggtb
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.761
ENSLCAP00010001608
Intersectin 1 (SH3 domain protein).
    
 0.747
ENSLCAP00010032062
Uncharacterized protein.
   
 0.704
LOC108883875
GRASP55_65 domain-containing protein.
   
 0.688
gorasp1
GRASP55_65 domain-containing protein.
   
 0.688
ENSLCAP00010021513
GRASP55_65 domain-containing protein.
   
 0.688
GORASP2
GRASP55_65 domain-containing protein.
   
 0.688
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.