STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLCAP00010015439Ubiquitin associated protein 2a. (1216 aa)    
Predicted Functional Partners:
Rptor
Regulatory associated protein of MTOR, complex 1.
    
 
 0.785
Mtor
Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.
    
   0.767
ENSLCAP00010003855
GTPase activating protein (SH3 domain) binding protein 2.
   
 
 0.641
G3bp1
GTPase activating protein (SH3 domain) binding protein 1.
   
 
 0.641
fmr1
Uncharacterized protein.
    
 
 0.548
ENSLCAP00010030998
Malate synthase-like.
   
  
 0.542
med14
Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
   
 
 0.527
Aasdh
Uncharacterized protein.
  
 0.508
ENSLCAP00010032646
BAT2_N domain-containing protein.
   
 
 0.504
ENSLCAP00010032650
Uncharacterized protein.
   
 
 0.504
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.