STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLCAP00010016709Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (345 aa)    
Predicted Functional Partners:
ckap4
Uncharacterized protein.
   
 
 0.611
Ska1
Spindle and kinetochore associated complex subunit 1.
   
 
 0.526
ska2
SKA2 domain-containing protein.
   
 
 0.525
LOC108902008
Uncharacterized protein.
    
 
 0.520
timeless
Uncharacterized protein.
   
 
 0.440
tipin
TIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family.
   
 
 0.439
rpa3
Uncharacterized protein.
   
   0.418
ENSLCAP00010036865
Ring finger and WD repeat domain 3.
    
   0.410
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.