STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLCAP00010018397Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (235 aa)    
Predicted Functional Partners:
LOC108894169
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 0.987
LOC108890849
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 0.987
LOC108886571
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 0.987
csnk2a2
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 0.987
Fundc1
Uncharacterized protein.
     
 0.953
FUNDC1
Uncharacterized protein.
     
 0.953
dvl2
Uncharacterized protein.
    
 0.945
dvl3
Uncharacterized protein.
    
 0.945
supt16h
Uncharacterized protein.
    
  0.927
ENSLCAP00010023916
FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]
   
  0.926
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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