STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLCAP00010019565Ribosomal RNA adenine dimethylase domain containing 1. (185 aa)    
Predicted Functional Partners:
LOC108895151
Uncharacterized protein.
    
 0.633
CASTOR1
Uncharacterized protein.
    
 0.633
Mios
Missing oocyte, meiosis regulator, homolog (Drosophila).
    
 0.618
setd4
Uncharacterized protein.
   
  
 0.597
rsad1
Radical S-adenosyl methionine domain-containing protein; May be a heme chaperone, appears to bind heme. Homologous bacterial proteins do not have oxygen-independent coproporphyrinogen- III oxidase activity. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L- methionine; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
   
  
 0.592
wdr24
WD_REPEATS_REGION domain-containing protein.
    
 0.521
wdr59
Uncharacterized protein.
    
 0.501
Mtrf1l
Mitochondrial translational release factor 1-like.
   
  
 0.467
Ddx55
DEAD (Asp-Glu-Ala-Asp) box polypeptide 55; Belongs to the DEAD box helicase family.
   
    0.447
ENSLCAP00010041611
Methyltransferase like 9.
      
 0.442
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.