STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SharpinSHANK-associated RH domain interacting protein. (435 aa)    
Predicted Functional Partners:
LOC108894452
Uncharacterized protein.
  
0.996
LOC108896760
Uncharacterized protein.
    
 0.993
ripk1
Uncharacterized protein.
    
 0.972
ENSLCAP00010024056
Tumor necrosis factor receptor superfamily, member 1a.
    
 0.969
ENSLCAP00010034930
RanBP-type and C3HC4-type zinc finger containing 1.
   
0.969
ENSLCAP00010050445
NEMO domain-containing protein.
    
 0.968
xiap
RING-type domain-containing protein.
    
 0.956
LOC108893387
Uncharacterized protein.
    
 0.951
ENSLCAP00010013860
Si:dkey-181m9.8.
    
 0.933
ENSLCAP00010053450
RING-type domain-containing protein.
    
 0.933
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.