STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108887317DUF1681 domain-containing protein. (268 aa)    
Predicted Functional Partners:
ENSLCAP00010038150
Intersectin 2a.
    
 0.990
ENSLCAP00010057040
Intersectin 2b.
    
 0.990
ENSLCAP00010001608
Intersectin 1 (SH3 domain protein).
    
 0.984
ENSLCAP00010038334
Cyclin G associated kinase.
    
 0.966
ube2j2
UBIQUITIN_CONJUGAT_2 domain-containing protein.
 
    
 0.860
ap2a1
AP-2 complex subunit alpha; Component of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. The clathrin lattice serves as a mechanical scaffold bu [...]
    
 0.855
ENSLCAP00010003282
MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.
    
 0.809
ENSLCAP00010022531
MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.
    
 0.809
AP2M1
Adaptor related protein complex 2 subunit mu 1b; Belongs to the adaptor complexes medium subunit family.
    
 0.809
ap2s1
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
    
  0.808
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.