STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plod2Fe2OG dioxygenase domain-containing protein. (756 aa)    
Predicted Functional Partners:
LOC108879294
Uncharacterized protein.
   
0.948
Colgalt1
Collagen beta(1-O)galactosyltransferase 1.
   
0.948
LOC108902652
Uncharacterized protein.
   
0.948
LOC108877375
Uncharacterized protein.
   
0.948
ENSLCAP00010051422
Si:ch211-13f8.2.
   
0.947
LOC108892696
Fe2OG dioxygenase domain-containing protein.
  
  
 
0.901
ENSLCAP00010027353
Uncharacterized protein.
     
  0.900
smyd3
Uncharacterized protein.
   
 0.683
LOC108893500
Uncharacterized protein.
    
 0.682
LOC108882946
Uncharacterized protein.
    
 0.682
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.