ercc5 protein (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ercc5

Uncharacterized protein. (1138 aa)

Predicted Functional Partners:

Ercc3

0.962

Ercc6

0.958

gtf2h1

0.955

ercc2

0.950

Ercc4

0.944

pcna

0.942

xpa

0.925

fancm

0.909

xpc

0.903

LOC108878580

0.902

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ercc3	Ercc4	ENSLCAP00010018337	ENSLCAP00010001551	Excision repair cross-complementation group 3.	Excision repair cross-complementation group 4.	0.904
Ercc3	Ercc6	ENSLCAP00010018337	ENSLCAP00010007352	Excision repair cross-complementation group 3.	Excision repair cross-complementation group 6.	0.895
Ercc3	LOC108878580	ENSLCAP00010018337	ENSLCAP00010052384	Excision repair cross-complementation group 3.	General transcription factor IIH subunit.	0.998
Ercc3	ercc2	ENSLCAP00010018337	ENSLCAP00010019831	Excision repair cross-complementation group 3.	Helicase ATP-binding domain-containing protein.	0.999
Ercc3	ercc5	ENSLCAP00010018337	ENSLCAP00010021891	Excision repair cross-complementation group 3.	Uncharacterized protein.	0.962
Ercc3	fancm	ENSLCAP00010018337	ENSLCAP00010044771	Excision repair cross-complementation group 3.	Uncharacterized protein.	0.896
Ercc3	gtf2h1	ENSLCAP00010018337	ENSLCAP00010031297	Excision repair cross-complementation group 3.	Uncharacterized protein.	0.999
Ercc3	pcna	ENSLCAP00010018337	ENSLCAP00010007860	Excision repair cross-complementation group 3.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.618
Ercc3	xpa	ENSLCAP00010018337	ENSLCAP00010019437	Excision repair cross-complementation group 3.	XPA_C domain-containing protein.	0.977
Ercc3	xpc	ENSLCAP00010018337	ENSLCAP00010059700	Excision repair cross-complementation group 3.	Uncharacterized protein.	0.974
Ercc4	Ercc3	ENSLCAP00010001551	ENSLCAP00010018337	Excision repair cross-complementation group 4.	Excision repair cross-complementation group 3.	0.904
Ercc4	Ercc6	ENSLCAP00010001551	ENSLCAP00010007352	Excision repair cross-complementation group 4.	Excision repair cross-complementation group 6.	0.744
Ercc4	LOC108878580	ENSLCAP00010001551	ENSLCAP00010052384	Excision repair cross-complementation group 4.	General transcription factor IIH subunit.	0.743
Ercc4	ercc2	ENSLCAP00010001551	ENSLCAP00010019831	Excision repair cross-complementation group 4.	Helicase ATP-binding domain-containing protein.	0.885
Ercc4	ercc5	ENSLCAP00010001551	ENSLCAP00010021891	Excision repair cross-complementation group 4.	Uncharacterized protein.	0.944
Ercc4	fancm	ENSLCAP00010001551	ENSLCAP00010044771	Excision repair cross-complementation group 4.	Uncharacterized protein.	0.879
Ercc4	gtf2h1	ENSLCAP00010001551	ENSLCAP00010031297	Excision repair cross-complementation group 4.	Uncharacterized protein.	0.751
Ercc4	pcna	ENSLCAP00010001551	ENSLCAP00010007860	Excision repair cross-complementation group 4.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.854
Ercc4	xpa	ENSLCAP00010001551	ENSLCAP00010019437	Excision repair cross-complementation group 4.	XPA_C domain-containing protein.	0.989
Ercc4	xpc	ENSLCAP00010001551	ENSLCAP00010059700	Excision repair cross-complementation group 4.	Uncharacterized protein.	0.794