STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108882674IF rod domain-containing protein; Belongs to the intermediate filament family. (553 aa)    
Predicted Functional Partners:
Actr5
ARP5 actin related protein 5 homolog; Belongs to the actin family.
    
 0.834
tfpt
Uncharacterized protein.
   
 0.820
nfrkb
NFRKB_winged domain-containing protein.
    
 0.818
mcrs1
FHA domain-containing protein.
    
 0.801
ino80c
YL1_C domain-containing protein.
    
 0.783
UNC79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.779
actr8
Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily.
    
 0.778
ENSLCAP00010042308
INO80 complex subunit.
    
 0.774
ruvbl1
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
    
 0.742
actl6a
Uncharacterized protein; Belongs to the actin family.
    
 0.702
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.