STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf216Uncharacterized protein. (1127 aa)    
Predicted Functional Partners:
rps27a
Ubiquitin-like domain-containing protein.
   
 0.886
LOC108876789
Ubiquitin-like domain-containing protein.
    
  0.730
LOC108883656
Ubiquitin-like domain-containing protein.
    
  0.730
LOC108876789-2
Ubiquitin-like domain-containing protein.
    
  0.730
Ubb
Ubiquitin B.
   
 0.688
ENSLCAP00010046672
Ubiquitin-like domain-containing protein.
   
 0.688
otulin
Uncharacterized protein.
    
 0.686
ripk1
Uncharacterized protein.
    
 0.639
LOC108898993
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.632
LOC108881933
RBR-type E3 ubiquitin transferase.
    
 0.609
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.