STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108879236RING-type domain-containing protein. (268 aa)    
Predicted Functional Partners:
tmub1
Ubiquitin-like domain-containing protein.
    
 
 0.676
ENSLCAP00010028143
ER lipid raft associated 1.
    
 
 0.650
ube2j1
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 
 0.632
LOC108878398
PHB domain-containing protein.
    
 
 0.614
ENSLCAP00010055039
Transmembrane protein 259.
      
 0.503
tmub2
Ubiquitin-like domain-containing protein.
    
 
 0.482
rnf41
Uncharacterized protein.
   
  
 0.480
tmem134
Uncharacterized protein.
      
 0.475
tor2a
Torsin.
      
 0.471
ppm1e
Uncharacterized protein.
      
 0.465
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.