STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bbs2Bardet-Biedl syndrome 2 protein homolog. (721 aa)    
Predicted Functional Partners:
ENSLCAP00010009262
Bardet-Biedl syndrome 9.
  
 0.996
bbs7
Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.
  
 0.996
ttc8
TPR_REGION domain-containing protein.
  
 0.992
bbs4
TPR_REGION domain-containing protein.
   
 0.992
bbs1
BBS1 domain-containing protein.
   
 0.991
LOC108889959
PHTB1_C domain-containing protein.
   
 0.979
lztfl1
Uncharacterized protein.
   
 0.958
bbs5
Bardet-Biedl syndrome 5 protein homolog; Required for ciliogenesis; Belongs to the BBS5 family.
    
 0.944
LOC108883911
BTB domain-containing protein.
    
 0.848
Klhl40
Kelch-like family member 40b.
    
 0.848
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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