tnpo3 protein (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

tnpo3

Uncharacterized protein. (963 aa)

Predicted Functional Partners:

LOC108893547

0.886

ENSLCAP00010026016

0.886

ran

0.822

adgrd1

0.822

SRSF6

0.795

LOC108899492

0.795

srsf5

0.795

LOC108887263

0.795

LOC108879861

0.780

ENSLCAP00010009483

0.748

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010009483	tnpo3	ENSLCAP00010009483	ENSLCAP00010024129	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein.	0.748
ENSLCAP00010026016	LOC108879861	ENSLCAP00010026016	ENSLCAP00010015478	Serine/arginine-rich splicing factor 1a.	Uncharacterized protein.	0.863
ENSLCAP00010026016	LOC108887263	ENSLCAP00010026016	ENSLCAP00010055429	Serine/arginine-rich splicing factor 1a.	Uncharacterized protein.	0.721
ENSLCAP00010026016	LOC108899492	ENSLCAP00010026016	ENSLCAP00010037039	Serine/arginine-rich splicing factor 1a.	RRM domain-containing protein.	0.710
ENSLCAP00010026016	SRSF6	ENSLCAP00010026016	ENSLCAP00010002006	Serine/arginine-rich splicing factor 1a.	Serine and arginine rich splicing factor 6.	0.718
ENSLCAP00010026016	srsf5	ENSLCAP00010026016	ENSLCAP00010050489	Serine/arginine-rich splicing factor 1a.	Uncharacterized protein.	0.718
ENSLCAP00010026016	tnpo3	ENSLCAP00010026016	ENSLCAP00010024129	Serine/arginine-rich splicing factor 1a.	Uncharacterized protein.	0.886
LOC108879861	ENSLCAP00010026016	ENSLCAP00010015478	ENSLCAP00010026016	Uncharacterized protein.	Serine/arginine-rich splicing factor 1a.	0.863
LOC108879861	LOC108887263	ENSLCAP00010015478	ENSLCAP00010055429	Uncharacterized protein.	Uncharacterized protein.	0.741
LOC108879861	LOC108893547	ENSLCAP00010015478	ENSLCAP00010021607	Uncharacterized protein.	Uncharacterized protein.	0.862
LOC108879861	LOC108899492	ENSLCAP00010015478	ENSLCAP00010037039	Uncharacterized protein.	RRM domain-containing protein.	0.730
LOC108879861	SRSF6	ENSLCAP00010015478	ENSLCAP00010002006	Uncharacterized protein.	Serine and arginine rich splicing factor 6.	0.740
LOC108879861	srsf5	ENSLCAP00010015478	ENSLCAP00010050489	Uncharacterized protein.	Uncharacterized protein.	0.741
LOC108879861	tnpo3	ENSLCAP00010015478	ENSLCAP00010024129	Uncharacterized protein.	Uncharacterized protein.	0.780
LOC108887263	ENSLCAP00010026016	ENSLCAP00010055429	ENSLCAP00010026016	Uncharacterized protein.	Serine/arginine-rich splicing factor 1a.	0.721
LOC108887263	LOC108879861	ENSLCAP00010055429	ENSLCAP00010015478	Uncharacterized protein.	Uncharacterized protein.	0.741
LOC108887263	LOC108893547	ENSLCAP00010055429	ENSLCAP00010021607	Uncharacterized protein.	Uncharacterized protein.	0.720
LOC108887263	tnpo3	ENSLCAP00010055429	ENSLCAP00010024129	Uncharacterized protein.	Uncharacterized protein.	0.795
LOC108893547	LOC108879861	ENSLCAP00010021607	ENSLCAP00010015478	Uncharacterized protein.	Uncharacterized protein.	0.862
LOC108893547	LOC108887263	ENSLCAP00010021607	ENSLCAP00010055429	Uncharacterized protein.	Uncharacterized protein.	0.720