STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbm34Uncharacterized protein. (433 aa)    
Predicted Functional Partners:
Brix1
Brix domain containing 2.
   
 
 0.985
rpf2
Brix domain-containing protein.
   
 
 0.983
ENSLCAP00010024803
RNA binding motif protein 28.
   
 
 0.982
cebpz
CBF domain-containing protein.
   
 
 0.978
ftsj3
pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.
   
 
 0.975
ddx56
Uncharacterized protein.
   
 0.972
Ebna1bp2
EBNA1 binding protein 2.
   
 
 0.963
Ddx24
DEAD (Asp-Glu-Ala-Asp) box helicase 24.
   
 0.959
Pwp1
PWP1 homolog, endonuclein.
   
 
 0.957
ENSLCAP00010050097
WD repeat domain 74.
   
 
 0.949
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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