STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
edrf1Uncharacterized protein. (1253 aa)    
Predicted Functional Partners:
hikeshi
DUF775 domain-containing protein.
      
 0.599
kcnk5
Uncharacterized protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.
      
 0.453
ENSLCAP00010006684
G protein-coupled receptor 182; Belongs to the G-protein coupled receptor 1 family.
      
 0.441
pik3cd
Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.
      
 0.435
Tmem206
Transmembrane protein 206.
      
 0.435
ENSLCAP00010016324
Immunoglobulin superfamily, member 5b.
      
 0.408
ENSLCAP00010032321
Immunoglobulin superfamily, member 5a.
      
 0.408
LOC108873743
Uncharacterized protein.
      
 0.406
LOC108875332
Uncharacterized protein.
      
 0.406
LOC108889116
CSD_1 domain-containing protein.
      
 0.400
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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