STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snapc5Uncharacterized protein. (121 aa)    
Predicted Functional Partners:
ENSLCAP00010051523
Uncharacterized protein.
    
 0.983
snapc3
Uncharacterized protein.
    
 0.950
ENSLCAP00010003213
Uncharacterized protein.
    
 0.945
snapc1
Uncharacterized protein.
    
 0.945
snapc1-2
Uncharacterized protein.
    
 0.945
gtf2b
TFIIB-type domain-containing protein.
    
 0.922
Snapc2
Uncharacterized protein.
     
 0.878
gtf2a1
Uncharacterized protein.
    
  0.834
gtf2a2
Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.
    
  0.834
Gtf2a1l
General transcription factor IIA, 1-like.
    
  0.741
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.