STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLCAP00010026700Intraflagellar transport 88 homolog. (861 aa)    
Predicted Functional Partners:
ift52
ABC_transp_aux domain-containing protein.
  
 
 0.994
Ift80
Intraflagellar transport 80 homolog (Chlamydomonas).
   
 0.993
ift57
Uncharacterized protein.
    
 0.993
cluap1
Uncharacterized protein.
    
 0.993
ttc26
Uncharacterized protein.
  
 0.993
ift81
IFT81_CH domain-containing protein.
   
 0.993
ENSLCAP00010054632
Intraflagellar transport 46 homolog (Chlamydomonas).
    
 0.989
ENSLCAP00010031025
Fleer.
    
 0.985
ift172
Uncharacterized protein.
   
 0.979
ift22
Uncharacterized protein.
   
 0.976
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.