STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLCAP00010027604C2 domain-containing protein. (130 aa)    
Predicted Functional Partners:
rps27a
Ubiquitin-like domain-containing protein.
    
 0.610
ENSLCAP00010025605
Large tumor suppressor kinase 1.
    
 0.565
Lats2
Large tumor suppressor kinase 2.
    
 0.565
ENSLCAP00010038150
Intersectin 2a.
   
  0.524
ENSLCAP00010057040
Intersectin 2b.
   
  0.524
sav1
Uncharacterized protein.
    
 0.493
ENSLCAP00010011355
Protein kinase domain-containing protein.
    
 0.483
LOC108881792
Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.
    
 0.483
LOC108876789
Ubiquitin-like domain-containing protein.
    
 0.479
LOC108883656
Ubiquitin-like domain-containing protein.
    
 0.479
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.