STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rspo4R-spondin 4. (216 aa)    
Predicted Functional Partners:
lgr4
G_PROTEIN_RECEP_F1_2 domain-containing protein.
   
 0.978
rnf43
RING-type domain-containing protein.
   
 0.973
Znrf3
Zinc and ring finger 3.
   
 0.971
LGR6
G_PROTEIN_RECEP_F1_2 domain-containing protein.
    
 0.962
LGR5
Leucine rich repeat containing G protein-coupled receptor 5.
   
 0.727
rxfp1
G_PROTEIN_RECEP_F1_2 domain-containing protein.
   
 0.610
ENSLCAP00010051338
Relaxin family peptide receptor 2a.
   
 0.610
Rspo3
R-spondin 3.
  
  
0.592
rps27a
Ubiquitin-like domain-containing protein.
   
 
  0.565
Ubb
Ubiquitin B.
   
 
  0.497
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.