STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLCAP00010028034Uncharacterized protein. (109 aa)    
Predicted Functional Partners:
trip12
Uncharacterized protein.
   
    0.923
Pds5a
PDS5 cohesin associated factor A.
   
 0.881
pds5b
Uncharacterized protein.
   
 0.880
Smc3
Structural maintenance of chromosomes protein.
   
 0.832
ENSLCAP00010032147
SMC hinge domain-containing protein.
   
 0.832
rbm20
Matrin-type domain-containing protein.
   
 0.785
Smc1a
Structural maintenance of chromosomes protein.
   
 0.777
LOC108880872
Structural maintenance of chromosomes protein.
   
 0.777
Cdca5
Uncharacterized protein.
    
 0.773
LOC108882190
Uncharacterized protein.
    
 0.753
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.