STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLCAP00010028244Coiled-coil domain containing 6a. (418 aa)    
Predicted Functional Partners:
ppp4c
Serine/threonine-protein phosphatase.
    
 
 0.701
Ppp4r1
WRNPLPNID domain-containing protein.
    
 
 0.675
ret
Proto-oncogene tyrosine-protein kinase receptor Ret; Receptor tyrosine-protein kinase involved in numerous cellular mechanisms including cell proliferation, neuronal navigation, cell migration, and cell differentiation upon binding with glial cell derived neurotrophic factor family ligands.
      
 0.601
LOC108895267
Uncharacterized protein.
    
 
 0.593
ENSLCAP00010050130
Vac14_Fab1_bd domain-containing protein.
    
 
 0.593
LOC108885572
DUF3338 domain-containing protein.
      
 0.582
pdxdc1
Uncharacterized protein.
      
 0.579
ENSLCAP00010023541
Serine/arginine repetitive matrix 2.
      
 0.577
ENSLCAP00010053907
RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing.
    
 
 0.482
JMJD8
Jumonji domain containing 8.
      
 0.471
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.