STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLCAP00010029177Uncharacterized protein. (330 aa)    
Predicted Functional Partners:
ENSLCAP00010029168
Uncharacterized protein.
 
     0.918
ctnnb1
Uncharacterized protein.
    
 0.579
ENSLCAP00010008602
Junction plakoglobin a.
    
 0.541
ENSLCAP00010015307
Uncharacterized protein.
    
 0.541
ENSLCAP00010021275
Uncharacterized protein.
    
 0.541
ctnna2
Uncharacterized protein.
    
 0.493
ENSLCAP00010016277
Catenin (cadherin-associated protein), alpha 1.
    
 0.493
LOC108894393
Uncharacterized protein.
    
 0.493
ENSLCAP00010008813
Uncharacterized protein.
   
0.482
ENSLCAP00010014280
Protocadherin-related 15a.
   
0.482
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.