STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbccC-CAP/cofactor C-like domain-containing protein. (347 aa)    
Predicted Functional Partners:
arl3
Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.
    
 0.859
ENSLCAP00010033669
Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.
    
 0.859
LOC108899205
Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.
    
 0.829
tbcd
TFCD_C domain-containing protein.
    
 0.773
tbce
CAP-Gly domain-containing protein.
    
 0.767
arl2
Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.
    
 
 0.654
skp1
Uncharacterized protein; Belongs to the SKP1 family.
      
 0.647
ENSLCAP00010013637
Tubulin folding cofactor B.
      
 0.642
LOC108899683
GMP_PDE_delta domain-containing protein.
     
 0.634
Unc119b
Unc-119 homolog 1.
     
 0.634
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.