STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl38Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family. (70 aa)    
Predicted Functional Partners:
Rps8
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
   
 
 0.999
RPL7A
Ribosomal_L7Ae domain-containing protein.
   
 0.999
Rpl9
Ribosomal protein L9.
   
 0.999
rps6
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 
 0.999
Rpl28
Ribosomal protein L28.
   
 0.999
rpl37
Ribosomal protein L37; Binds to the 23S rRNA.
   
 0.999
rps27a
Ubiquitin-like domain-containing protein.
   
 0.999
RPL27A
Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.
   
 0.999
ENSLCAP00010006059
Ribosomal protein L6.
   
 0.999
LOC108900280
Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.
   
 
 0.999
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.