STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108880375EABR domain-containing protein. (386 aa)    
Predicted Functional Partners:
ttk
Protein kinase domain-containing protein.
   
  
 0.857
ENSLCAP00010046361
Abnormal spindle microtubule assembly.
   
  
 0.821
ndc80
DUF5595 domain-containing protein.
   
  
 0.814
nuf2
Uncharacterized protein.
   
  
 0.809
nusap1
Uncharacterized protein.
   
  
 0.806
ube2c
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
  
 0.761
ncapg
Cnd3 domain-containing protein.
   
  
 0.730
ENSLCAP00010049633
PCNA clamp associated factor.
   
  
 0.720
prc1
Uncharacterized protein.
   
  
 0.675
LOC108876687
Uncharacterized protein.
   
  
 0.675
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.