STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FILIP1LCortBP2 domain-containing protein. (1238 aa)    
Predicted Functional Partners:
trappc1
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.756
ENSLCAP00010017786
Trafficking protein particle complex 8.
    
 0.756
trappc4
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.741
TRAPPC2B
Trafficking protein particle complex 2B.
    
 0.735
ENSLCAP00010031928
Leber congenital amaurosis 5.
    
 0.708
ENSLCAP00010034865
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 0.708
ENSLCAP00010004060
USO1 vesicle transport factor.
   
 0.678
LOC108898686
Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 0.677
trappc5
Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 0.677
trappc6b
Uncharacterized protein.
    
 0.675
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.