STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
c6Uncharacterized protein. (1026 aa)    
Predicted Functional Partners:
C9
Complement component 9.
   
0.980
c5
Uncharacterized protein.
   
 0.974
c8g
Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family.
   
 0.915
C8A
MACPF domain-containing protein.
   
 
0.892
c8b
MACPF domain-containing protein.
   
 
0.799
ENSLCAP00010026364
Vitronectin a.
   
 
 0.644
LOC108893634
SMB domain-containing protein.
   
 
 0.644
ENSLCAP00010038055
Ig-like domain-containing protein.
   
 
 0.588
ENSLCAP00010040192
Ig-like domain-containing protein.
   
 
 0.588
ENSLCAP00010040361
annotation not available
   
 
 0.588
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.