STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bcl7bUncharacterized protein. (203 aa)    
Predicted Functional Partners:
ss18
Uncharacterized protein.
    
 
 0.682
SS18L1
Uncharacterized protein.
    
 
 0.682
brd9
Bromo domain-containing protein.
   
 
 0.645
ENSLCAP00010015050
WD repeat domain 53.
      
 0.584
Baz1b
Bromodomain adjacent to zinc finger domain, 1B.
      
 0.577
ss18l2
Uncharacterized protein.
    
 
 0.573
brd7
Bromo domain-containing protein.
   
 
 0.548
SMARCB1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.
   
 
 0.546
LOC108900728
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.
   
 
 0.546
arid2
Uncharacterized protein.
    
 
 0.539
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.