STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mybUncharacterized protein. (655 aa)    
Predicted Functional Partners:
ENSLCAP00010001908
CREB binding protein b.
   
 
 0.912
ENSLCAP00010024216
CREB binding protein a.
   
 
 0.912
LOC108890483
CCAAT/enhancer-binding protein.
    
 0.889
ENSLCAP00010023432
E1A binding protein p300 b.
   
 
 0.879
LOC108889691
ETS domain-containing protein.
     
 0.807
lin52
Uncharacterized protein.
    
 0.780
lin9
DIRP domain-containing protein.
    
 0.778
LOC108902563
Runt-related transcription factor.
     
 0.775
Lin37
Lin-37 DREAM MuvB core complex component.
   
 0.762
ENSLCAP00010031917
T-cell acute lymphocytic leukemia 1.
    
 0.745
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.