STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLCAP00010036032Cadherin_C domain-containing protein; Cadherins are calcium-dependent cell adhesion proteins. (176 aa)    
Predicted Functional Partners:
ENSLCAP00010036503
Uncharacterized protein.
 
      0.831
Cdh13
Cadherin 13, H-cadherin (heart).
 
   
 0.803
ctnnb1
Uncharacterized protein.
   
 0.766
ENSLCAP00010008602
Junction plakoglobin a.
   
 0.588
ENSLCAP00010021275
Uncharacterized protein.
   
 0.588
LOC108900140
Uncharacterized protein.
    
 0.561
ENSLCAP00010037358
Uncharacterized protein.
    
 0.561
CTNND1
Uncharacterized protein.
    
 0.561
ARVCF
Uncharacterized protein.
    
 0.561
ENSLCAP00010015307
Uncharacterized protein.
   
 0.547
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.